H Locus (Harlequin, Great Dane Type)

Other Names: H locus, harlequin coat color, harlequin coat pattern
Affected Genes: PSMB7
Inheritance: Autosomal Dominant
Mutation: chr9:58530295 (canFam3): T>G
Breed(s): Great Dane
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Testing Summary

The H Locus (Harlequin) coat color test reliably determines if a dog has one of the following genotypes at the H locus:


This dog carries two copies of h and will not have a harlequin coat color. The dog will pass on h to 100% of its offspring.

Interpretation: No harlequin

This dog carries one copy of H and one copy of h which results in a harlequin coat color. However, this dog’s coat color is also dependent on the M gene. The harlequin coat color is only expressed if the dog is also M/M or M/m at the M (merle) coat color locus which causes the dilute regions of the merle pattern to become white. This dog will pass on H to 50% of its offspring and h to 50% of its offspring.

Interpretation: Harlequin

This dog carries two copies of H which is not compatible with life. Dogs with two copies of H die In Utero.

Interpretation: Embryonic lethal

Detailed Summary

Harlequin is a specific coat color pattern marked by patches of full color on a white background. This patterning is a result of the interaction of two different genes, the merle (M Locus) gene, PMEL, and a modifier gene, PSMB7, at the harlequin (H locus). Dogs that have one copy of H in addition to one copy of M will have the characteristic harlequin coat color pattern. A dog with one copy of H but two copies of M (double merle) has a coat color that can be indistinguishable from a dog without the harlequin variant. While the harlequin coat color is not considered a defect, breeding studies indicate that inheriting two copies of the H gene variant is not compatible with life. Puppies with two copies of the PSMB7 gene variant (H/H) most likely die very early in gestation; therefore, breeding two dogs with harlequin coat color (H/h) may result in reduced litter size.

Testing Tips

Genetic testing of the PSMB7 gene will reliably determine whether a dog is a genetic Carrier of the harlequin coat color. Harlequin coat color is inherited in an Autosomal Dominant manner in dogs meaning that dogs only need to inherit one copy of the variant gene to have the characteristic harlequin coat color. Each pup that is born to a dog with the harlequin coat color has a 50% chance of inheriting one copy of the PSMB7 gene variant (H) and having a harlequin coat color. Breeding of two dogs with harlequin coat color is not recommended as this condition appears to be lethal in offspring that inherit two copies of the variant. These types of breedings may generate small litters or no offspring. Mantle colored dogs with either one copy or no copies of the harlequin gene are physically indistinguishable from each other. This genetic test will allow for identification of mantle colored dogs with one copy of the harlequin gene to prevent breeding them to another dog carrying a harlequin gene and thus, decreasing chances of embryological death of puppies. Reliable genetic testing is important for determining breeding practices. In order to avoid producing Homozygous pups, breeding of known carriers to each other is not recommended.

There may be other causes of this condition in dogs and a normal result does not exclude a different mutation in this gene or any other gene that may result in a similar genetic disease or trait.


  • Clark LA, Starr AN, Tsai KL, Murphy KE. Genome-wide linkage scan localizes the harlequin locus in the Great Dane to chromosome 9. Gene. 2008 Jul 15; 418(1-2):49-52. [PubMed: 18513894]
  • Clark LA, Tsai KL, Starr AN, Nowend KL, Murphy KE. A missense mutation in the 20S proteasome β2 subunit of Great Danes having harlequin coat patterning. Genomics. 2011 Apr; 97(4):244-8. [PubMed: 21256207]